Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
qnrB1Fluoroquinolone resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)    
Predicted Functional Partners:
AMF99751.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
gyrA
DNA gyrase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.706
emrD
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.696
blaCARB
Class A beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.679
AMF97915.1
Hemolysin III family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.590
parC
DNA topoisomerase IV subunit A; Decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.566
UreG
Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.562
UreG-2
Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.562
AMG00152.1
Thermolabile hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.478
lexA
LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.464
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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