Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMG00087.1CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)    
Predicted Functional Partners:
AMF96450.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.605
AMG01227.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.603
AMF96449.1
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.602
yadH
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.549
AMG00088.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
ydjA
NAD(P) nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
AMF97717.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
nfnB
NAD(P)H-dependent oxidoreductase; Catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
frp
NADPH-dependent oxidoreductase; Catalyzes the NADPH-dependent reduction of FMN to FMNH(2). Involved in bioluminescence by providing FMNH(2) to luciferase. Belongs to the flavin oxidoreductase frp family.
  
  
 0.480
AMG00658.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.