Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMG00102.1Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family. (301 aa)    
Predicted Functional Partners:
AMG00101.1
Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.994
AMF98534.1
Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.874
AMG00821.1
ATP-dependent Zn protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.778
AMG00879.1
Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.762
AMF98905.1
ATP-dependent Zn protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.761
frp
NADPH-dependent oxidoreductase; Catalyzes the NADPH-dependent reduction of FMN to FMNH(2). Involved in bioluminescence by providing FMNH(2) to luciferase. Belongs to the flavin oxidoreductase frp family.
  
  
 0.609
AMG00103.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
AMG00795.1
D-alanine--D-alanine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.518
arcA
Arginine deiminase; Catalyzes the degradation of arginine to citruline and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.510
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
     
 0.497
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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