STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG00894.1Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)    
Predicted Functional Partners:
AMG00895.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.913
AL538_24845
Type IV secretion protein Rhs; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.804
AMG00896.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.779
AMG00901.1
Protein of avirulence locus; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.743
AMF99306.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
VasA-3
Type VI secretion system protein ImpG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.671
AMF99307.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.664
AMG00898.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.623
AMG00904.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.596
AMG00909.1
Flagellar motor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.596
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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