AGS06976.1 protein (Profftella armatura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AGS06976.1

Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class). (325 aa)

Predicted Functional Partners:

rluC

0.792

dipP

0.562

pheT

0.544

fumA

0.531

mnmA

0.530

maeB

0.516

ftsH

0.486

yidC

0.482

clpP

0.465

clpB

0.460

Your Current Organism:

Profftella armatura

NCBI taxonomy Id: 669502
Other names: C. Profftella armatura, Candidatus Profftella armatura, syncytium symbiont of Diaphorina citri

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGS06976.1	clpB	SSDC_01450	SSDC_01310	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	0.460
AGS06976.1	clpP	SSDC_01450	SSDC_00465	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.465
AGS06976.1	dipP	SSDC_01450	SSDC_00650	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	COG3321 Polyketide synthase modules and related proteins; Belongs to the enoyl-CoA hydratase/isomerase family.	0.562
AGS06976.1	ftsH	SSDC_01450	SSDC_00520	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.486
AGS06976.1	fumA	SSDC_01450	SSDC_01725	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.531
AGS06976.1	maeB	SSDC_01450	SSDC_01390	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	COG0281 Malic enzyme.	0.516
AGS06976.1	mnmA	SSDC_01450	SSDC_00780	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.	0.530
AGS06976.1	pheT	SSDC_01450	SSDC_00385	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	phenylalanyl-tRNA synthetase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.544
AGS06976.1	rluC	SSDC_01450	SSDC_01455	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.792
AGS06976.1	yidC	SSDC_01450	SSDC_01550	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	Preprotein translocase YidC subunit; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.	0.482
clpB	AGS06976.1	SSDC_01310	SSDC_01450	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	0.460
clpB	clpP	SSDC_01310	SSDC_00465	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.976
clpB	dipP	SSDC_01310	SSDC_00650	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	COG3321 Polyketide synthase modules and related proteins; Belongs to the enoyl-CoA hydratase/isomerase family.	0.755
clpB	ftsH	SSDC_01310	SSDC_00520	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.606
clpB	maeB	SSDC_01310	SSDC_01390	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	COG0281 Malic enzyme.	0.772
clpB	yidC	SSDC_01310	SSDC_01550	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	Preprotein translocase YidC subunit; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.	0.481
clpP	AGS06976.1	SSDC_00465	SSDC_01450	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	Signal peptide peptidase, S49 family; COG0616 Periplasmic serine proteases (ClpP class).	0.465
clpP	clpB	SSDC_00465	SSDC_01310	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	ATP-dependent Clp protease ATP-binding subunit ClpB; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	0.976
clpP	dipP	SSDC_00465	SSDC_00650	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	COG3321 Polyketide synthase modules and related proteins; Belongs to the enoyl-CoA hydratase/isomerase family.	0.942
clpP	ftsH	SSDC_00465	SSDC_00520	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.693