AGS07056.1 protein (Profftella armatura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AGS07056.1

Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily. (211 aa)

Predicted Functional Partners:

AGS07057.1

0.700

trpS

0.577

metK

0.503

AGS07053.1

0.428

ahcY

0.413

tyrS

0.403

Your Current Organism:

Profftella armatura

NCBI taxonomy Id: 669502
Other names: C. Profftella armatura, Candidatus Profftella armatura, syncytium symbiont of Diaphorina citri

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGS07053.1	AGS07056.1	SSDC_01845	SSDC_01860	COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	0.428
AGS07053.1	ahcY	SSDC_01845	SSDC_01850	COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.779
AGS07053.1	metK	SSDC_01845	SSDC_01855	COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.676
AGS07056.1	AGS07053.1	SSDC_01860	SSDC_01845	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.428
AGS07056.1	AGS07057.1	SSDC_01860	SSDC_01865	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	Bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/transcriptional repressor; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.	0.700
AGS07056.1	ahcY	SSDC_01860	SSDC_01850	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.413
AGS07056.1	metK	SSDC_01860	SSDC_01855	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.503
AGS07056.1	trpS	SSDC_01860	SSDC_01115	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	COG0180 Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.577
AGS07056.1	tyrS	SSDC_01860	SSDC_01245	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.	0.403
AGS07057.1	AGS07056.1	SSDC_01865	SSDC_01860	Bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/transcriptional repressor; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	0.700
AGS07057.1	ahcY	SSDC_01865	SSDC_01850	Bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/transcriptional repressor; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.528
AGS07057.1	metK	SSDC_01865	SSDC_01855	Bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/transcriptional repressor; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.786
ahcY	AGS07053.1	SSDC_01850	SSDC_01845	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.779
ahcY	AGS07056.1	SSDC_01850	SSDC_01860	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	0.413
ahcY	AGS07057.1	SSDC_01850	SSDC_01865	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	Bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/transcriptional repressor; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.	0.528
ahcY	metK	SSDC_01850	SSDC_01855	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.961
metK	AGS07053.1	SSDC_01855	SSDC_01845	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.676
metK	AGS07056.1	SSDC_01855	SSDC_01860	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.	0.503
metK	AGS07057.1	SSDC_01855	SSDC_01865	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/transcriptional repressor; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.	0.786
metK	ahcY	SSDC_01855	SSDC_01850	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.961