Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lwal_0004Putative transcriptional regulator, XRE family. (107 aa)    
Predicted Functional Partners:
Lwal_0005
Hypothetical protein.
 
    0.968
Lwal_3225
Hypothetical protein.
  
     0.501
Lwal_3262
Zeta toxin.
  
 
 
 0.489
Lwal_3248
Hypothetical protein.
  
     0.451
Lwal_3247
N-acetyltransferase GCN5.
  
    0.450
Lwal_2862
N-acetyltransferase GCN5.
  
     0.431
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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