ccmG protein (Legionella waltersii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ccmG

Cytochrome C biogenesis protein. (179 aa)

Predicted Functional Partners:

ccmF

0.996

msrA

0.987

CcmH_2

0.986

ccmE

0.977

ccmH

0.977

ccmC

0.949

DsbD

0.944

EryA

0.931

ccmB

0.887

rir1

0.858

Your Current Organism:

Legionella waltersii

NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CcmH_2	ccmB	Lwal_0327	Lwal_0320	Cytochrome c type biogenesis protein CcmH.	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.859
CcmH_2	ccmC	Lwal_0327	Lwal_0321	Cytochrome c type biogenesis protein CcmH.	Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	0.886
CcmH_2	ccmE	Lwal_0327	Lwal_0323	Cytochrome c type biogenesis protein CcmH.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.958
CcmH_2	ccmF	Lwal_0327	Lwal_0324	Cytochrome c type biogenesis protein CcmH.	Cytochrome C-type biogenesis protein CcmF.	0.989
CcmH_2	ccmG	Lwal_0327	Lwal_0325	Cytochrome c type biogenesis protein CcmH.	Cytochrome C biogenesis protein.	0.986
CcmH_2	ccmH	Lwal_0327	Lwal_0326	Cytochrome c type biogenesis protein CcmH.	Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.	0.977
DsbD	ccmG	Lwal_2800	Lwal_0325	Thiol:disulfide interchange protein DsbD.	Cytochrome C biogenesis protein.	0.944
DsbD	msrA	Lwal_2800	Lwal_2136	Thiol:disulfide interchange protein DsbD.	Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.957
EryA	ccmG	Lwal_0942	Lwal_0325	Polyketide synthase module.	Cytochrome C biogenesis protein.	0.931
EryA	msrA	Lwal_0942	Lwal_2136	Polyketide synthase module.	Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.638
EryA	rir1	Lwal_0942	Lwal_1835	Polyketide synthase module.	Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.500
ccmB	CcmH_2	Lwal_0320	Lwal_0327	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Cytochrome c type biogenesis protein CcmH.	0.859
ccmB	ccmC	Lwal_0320	Lwal_0321	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	0.999
ccmB	ccmE	Lwal_0320	Lwal_0323	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.947
ccmB	ccmF	Lwal_0320	Lwal_0324	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Cytochrome C-type biogenesis protein CcmF.	0.907
ccmB	ccmG	Lwal_0320	Lwal_0325	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Cytochrome C biogenesis protein.	0.887
ccmB	ccmH	Lwal_0320	Lwal_0326	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.	0.885
ccmC	CcmH_2	Lwal_0321	Lwal_0327	Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	Cytochrome c type biogenesis protein CcmH.	0.886
ccmC	ccmB	Lwal_0321	Lwal_0320	Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.999
ccmC	ccmE	Lwal_0321	Lwal_0323	Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.997