Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lwal_0357Hypothetical protein. (250 aa)    
Predicted Functional Partners:
Lwal_0358
Cytokinin oxidase.
 
     0.938
iraA
Small-molecule methyltransferase IraA.
  
     0.771
Lwal_0110
LphB.
  
     0.769
Lwal_2103
Hypothetical protein.
  
     0.764
Lwal_1890
Hypothetical protein.
  
     0.761
Lwal_1249
Acid sphingomyelinase-like phosphodiesterase.
  
   
 0.724
Lwal_1360
Protein LphB.
  
     0.724
kmo-2
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
  
   0.716
TolC_3
Outer membrane efflux protein.
  
     0.716
Lwal_0405
DamX-related protein.
  
     0.708
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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