Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lwal_0508Competence protein A. (309 aa)    
Predicted Functional Partners:
lspD_1
Type II protein secretion LspD.
 
  
 0.968
Lwal_0509
Fimbrial assembly protein (PilN).
  
 
 0.965
Lwal_0510
Hypothetical protein.
 
     0.955
Lwal_0514
Hypothetical protein.
 
     0.934
Lwal_0513
Hypothetical protein.
 
    0.913
pilE_1
Tfp pilus assembly protein, major type IV pilin class A.
 
  
 0.906
pilN
Tfp pilus assembly protein PilN.
 
 
 0.870
Lwal_0511
Hypothetical protein.
       0.865
lspE_1
Type II protein secretion ATPase LspE.
 
 
 
 0.860
pilC_1
Pilus assembly protein PilC.
 
 
 
 0.829
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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