Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lspKType II secretory pathway protein. (313 aa)    
Predicted Functional Partners:
lspI
Type II secretory pathway protein LspI.
 
 
 0.999
lspJ
Type II secretory pathway protein LspJ.
 
 
 0.999
lspG
Type II secretory pathway protein LspG.
 
 
 0.997
GspH
General secretion pathway protein LspH.
 
 
 0.993
lspF
Type II secretory pathway protein LspF.
 
   
 0.983
lspD_2
Type II protein secretion LspD.
 
   
 0.922
Lwal_3318
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.885
Lwal_0361
General secretion pathway protein C.
 
  
 0.817
yghD
Putative general secretion pathway protein YghD.
 
  
 0.815
lspE_2
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.771
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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