close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YbhF_3ABC transporter ATP-binding protein. (312 aa)    
Predicted Functional Partners:
YbhS_2
ABC transporter permease.
  
 0.990
YbhS_1
ABC transporter permease.
  
 0.979
YbhR_2
ABC transporter permease.
  
 0.968
YbhR_1
ABC transporter permease.
  
 0.957
MacA_3
Hemolysin D.
  
 0.956
Lwal_0008
Hemolysin D.
 
  
 0.803
DgdA_1
Aminotransferase class-III.
       0.675
EryA
Polyketide synthase module.
  
 
 0.579
YrdA
Transferase.
  
    0.564
Lwal_2663
Saframycin Mx1 synthetase B.
  
  
 0.536
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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