Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lwal_1548Hypothetical protein. (254 aa)    
Predicted Functional Partners:
Lwal_1549
Hypothetical protein.
       0.594
OsmY_1
Osmotically inducible protein Y.
  
     0.492
Lwal_1687
Protein LvrA.
  
     0.478
lvrA_2
Legionella vir region protein.
  
     0.456
Lwal_0018
Peptidase, S24 family.
  
     0.436
lvrE_5
Legionella vir region protein.
  
     0.431
fabA
(3R)-hydroxymyristoyl-ACP dehydratase.
  
     0.428
Lwal_1263
Transmembrane protein.
  
     0.404
Lwal_0526
Hypothetical protein.
  
     0.403
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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