Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lwal_2167Coiled-coil protein. (530 aa)    
Predicted Functional Partners:
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.778
MlaA
Lipoprotein VacJ-like protein.
    
 
 0.760
Lwal_2103
Hypothetical protein.
 
     0.755
Lwal_1890
Hypothetical protein.
  
     0.743
iraA
Small-molecule methyltransferase IraA.
  
     0.719
Lwal_0295
Hypothetical protein.
  
     0.713
Lwal_2485
Protein IcmE (DotG).
  
    0.702
enhA_1
Enhanced entry protein EnhA.
  
     0.688
frgA
FrgA protein.
 
   
 0.688
TolC_3
Outer membrane efflux protein.
  
    0.685
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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