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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AlkB1Alkane-1-monooxygenase. (366 aa)    
Predicted Functional Partners:
GabD
Piperidine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.900
Lwal_2708
Sterol desaturase.
 
  
 0.812
fadH
2,4-dienoyl-CoA reductase FadH1.
 
   
 0.778
rubR
Rubredoxin.
 
  
 0.618
Hcr
Oxidoreductase, FAD-binding protein.
  
  
 0.592
EryA
Polyketide synthase module.
  
 
 0.563
Lwal_2663
Saframycin Mx1 synthetase B.
     
 0.558
pksJ
Polyketide synthase, type I.
 
 
 0.548
Lwal_2205
Metalloproteinase-like protein.
       0.511
lys
Saccharopine dehydrogenase.
  
    0.502
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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