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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DacB_1D-Ala-D-Ala carboxypeptidase. (468 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase.
  
  
 
0.919
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.917
LdcA_1
Muramoyltetrapeptide carboxypeptidase.
 
  
 0.742
LdcA_2
Muramoyltetrapeptide carboxypeptidase.
 
  
 0.737
enhA_2
Enhanced entry protein EnhA.
  
  
 0.562
rodA
Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
     
 0.526
Lwal_2304
Glycosyltransferase.
       0.524
enhA_1
Enhanced entry protein EnhA.
     
 0.504
enhA_3
Enhanced entry protein EnhA.
     
 0.504
enhA_4
Enhanced entry protein EnhA.
     
 0.504
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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