Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YadHABC transporter permease. (257 aa)    
Predicted Functional Partners:
CcmA_1
ABC transporter ATP binding protein.
  
 0.981
ThiF
Thiazole biosynthesis adenylyltransferase ThiF.
  
    0.633
Lwal_2440
SM-20-like protein.
       0.632
Lwal_2439
VipA.
       0.522
YbhF_1
ABC transporter ATP-binding protein.
  
  
 0.454
YbhF_3
ABC transporter ATP-binding protein.
  
  
 0.454
YhbG
ABC transporter ATP binding protein.
    
  0.410
Ttg2B_2
ABC transporter permease.
    
  0.409
ttg2B
Toluene tolerance protein Ttg2B.
    
  0.409
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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