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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CcmA_1ABC transporter ATP binding protein. (304 aa)    
Predicted Functional Partners:
YadH
ABC transporter permease.
  
 0.970
YbhS_1
ABC transporter permease.
 
  
 0.884
YbhS_2
ABC transporter permease.
 
  
 0.782
YbhR_2
ABC transporter permease.
 
  
 0.767
YbhR_1
ABC transporter permease.
 
  
 0.644
EryA
Polyketide synthase module.
  
 
 0.579
Lwal_2663
Saframycin Mx1 synthetase B.
  
  
 0.536
Lwal_2439
VipA.
       0.480
ugpC
Sn-glycerol-3-phosphate transport, ATP binding protein; Belongs to the ABC transporter superfamily.
 
    
0.441
atpD-2
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.421
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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