Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rimKGlutathione synthase, ribosomal protein S6 modification protein; Belongs to the RimK family. (302 aa)    
Predicted Functional Partners:
Lwal_2459
Cytochrome c oxidase assembly protein.
     
 0.763
Lwal_2252
Secreted protein.
 
  
 0.734
YpmQ
SCO1/SenC family transporter protein.
       0.732
Lwal_2457
SURF1 family protein.
       0.728
Lwal_2458
Hypothetical protein.
       0.728
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.728
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
     
 0.590
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.482
Lwal_2456
Hypothetical protein.
       0.472
Lwal_2455
Phosphatase.
       0.426
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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