Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trbG_2Conjugal transfer protein TrbG. (291 aa)    
Predicted Functional Partners:
trbI_2
Conjugal transfer protein TrbI.
 
 
 0.991
trbE_2
Conjugal transfer protein TrbE.
 
  
 0.980
trbI_1
Conjugal transfer protein TrbI.
 
 
 0.963
trbD_2
Conjugal transfer protein trbD.
 
     0.953
virB
LvhB11.
 
   
 0.952
trbF_2
Conjugal transfer protein trbF.
 
   
 0.950
traF
Conjugal transfer protein TraF.
 
   
 0.931
traG_2
Conjugal transfer protein TraG.
 
   
 0.929
traC
DNA primase traC.
 
     0.928
trbL_2
Conjugal transfer protein TrbL.
 
     0.925
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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