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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lwal_2708Sterol desaturase. (403 aa)    
Predicted Functional Partners:
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.856
AlkB1
Alkane-1-monooxygenase.
 
  
 0.812
crtB_1
All-trans-phytoene synthase.
  
 
 0.809
crtB_2
All-trans-phytoene synthase.
  
 
 0.809
Lwal_1576
Cytochrome P450(MEG).
  
 
 0.673
Lwal_2440
SM-20-like protein.
  
  
 0.645
Gmr_3
Regulatory protein (GGDEF domain).
  
  
 0.619
Cph2_6
Inner membrane protein.
  
  
 0.619
Gmr_4
GGDEF domain-containing sensory box protein.
  
  
 0.619
Lwal_1779
Hypothetical protein.
   
 
 0.583
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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