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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comADNA uptake/competence protein ComA. (733 aa)    
Predicted Functional Partners:
comF
Competence protein ComF.
 
  
 0.909
dprA
DNA processing enzyme DprA.
 
  
 0.899
OutO
Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.860
pilC_2
Pilus assembly protein PilC.
 
  
 0.771
pilE_2
type-IV pilin.
  
  
 0.769
PilV
Type IV fimbrial biogenesis protein PilV.
 
   
 0.761
pilC_1
Pilus assembly protein PilC.
  
  
 0.741
lspF
Type II secretory pathway protein LspF.
  
  
 0.741
FimT
Type IV pre-pilin.
     
 0.681
comEA
Competence protein ComEA.
  
  
 0.665
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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