Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YiaDOuter membrane protein, OmpA family protein. (230 aa)    
Predicted Functional Partners:
lphA
LphA (DotK).
  
 
  
0.911
Lwal_2169
Major outer membrane protein.
    
   0.885
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.876
TyrP_2
Tryptophan/tyrosine permease.
       0.865
Lwal_2485
Protein IcmE (DotG).
 
 
 0.820
dotC
Defect in organelle trafficking lipoprotein DotC.
   
 
 0.793
dotD
Lipoprotein DotD.
    
 
 0.792
Lwal_2484
IcmK protein.
   
   0.791
Lwal_2486
Protein IcmG (DotF).
   
   0.790
Lwal_0288
Neurogenic locus notch like protein precursor.
    
   0.787
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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