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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LdcA_2Muramoyltetrapeptide carboxypeptidase. (295 aa)    
Predicted Functional Partners:
DacB_1
D-Ala-D-Ala carboxypeptidase.
 
  
 0.737
dacB
D-alanyl-D-alanine carboxypeptidase.
 
  
 0.712
Lwal_2927
Hypothetical protein.
       0.613
PbpE_2
Serine-type D-Ala-D-Ala carboxypeptidase.
       0.549
Lwal_2929
Hypothetical protein.
       0.538
Lwal_2925
Homoserine kinase.
 
     0.525
Lwal_2926
Putative acyltransferase.
  
    0.517
Lwal_1996
Chloromuconate cycloisomerase.
 
  
 0.512
mrdA
Penicillin binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
    
 0.505
Lwal_2924
Hypothetical protein.
       0.443
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.