Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydcNDNA-binding transcriptional regulator. (188 aa)    
Predicted Functional Partners:
Lwal_2944
GNAT family acetyltransferase.
 
     0.776
Hph
Phosphotransferase enzyme family protein.
       0.773
grpB_2
Glutamate rich protein GrpB.
       0.773
Lwal_2943
GNAT family acetyltransferase; Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
  
    0.750
Lwal_2945
Methyltransferase.
       0.747
AacA-aphD_3
Aminoglycoside phosphotransferase.
       0.746
Lwal_2942
N-acetyltransferase GCN5.
       0.746
Lwal_2937
Hypothetical protein.
 
     0.695
Lwal_2936
Hypothetical protein.
 
     0.667
Lwal_2946
Putative aminoglycoside phosphotransferase.
       0.648
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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