Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lwal_3228Putative DNA-binding transcriptional regulator. (75 aa)    
Predicted Functional Partners:
HipA_2
HipA protein.
 
   
 0.965
hipA_2
HipA protein, DNA binding regulator.
 
     0.962
Lwal_3250
Hypothetical protein.
  
 
 0.684
Lwal_2946
Putative aminoglycoside phosphotransferase.
  
     0.522
Lwal_0414
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.504
Lwal_3231
Hypothetical protein.
       0.503
sidB_2
Substrate of the Dot/Icm system.
  
     0.486
metC
Cystathionine beta-lyase.
  
  
 0.422
Lwal_2571
Helix-turn-helix domain protein.
  
    0.400
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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