Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vipEVipE. (370 aa)    
Predicted Functional Partners:
Lwal_3245
Adenosine deaminase.
  
     0.716
Lwal_3187
Substrate of the Dot/Icm secretion system.
  
   
 0.706
Lwal_2855
Ankyrin repeats (3 copies).
  
     0.701
Lwal_1706
Membrane protein.
  
     0.672
Lwal_2901
Membrane protein.
  
     0.665
legL1_1
Gala protein type 1, 3 or 4.
  
     0.654
Lwal_1646
Membrane protein.
  
     0.651
Lwal_1699
Hypothetical protein.
  
     0.650
Lwal_1704
TraU protein.
  
     0.646
Lwal_1692
Bile acid beta-glucosidase.
  
     0.640
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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