Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Lwal_3329Trypsin. (298 aa)    
Predicted Functional Partners:
Lwal_1602
Serine/threonine protein kinase.
  
     0.768
Lwal_0467
Hypothetical protein.
  
     0.744
trbJ_2
Conjugal transfer protein TrbJ.
  
     0.741
spkD
Serine/threonine-protein kinase D.
 
     0.738
Lwal_1722
GNAT family acetyltransferase.
  
     0.736
Lwal_2859
LuxR family transcriptional regulator.
  
    0.735
Lwal_0466
Conserved exported protein of unknown function.
  
     0.733
Lwal_1714
Putative aminoglycoside phosphotransferase.
  
     0.729
traI_2
TraI protein.
  
     0.723
Lwal_2937
Hypothetical protein.
  
     0.707
Your Current Organism:
Legionella waltersii
NCBI taxonomy Id: 66969
Other names: ATCC 51914, CCUG 44924, CIP 104965, DSM 21908, L. waltersii, NCTC 13017, strain 2074-AUS-E
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