STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1E4TZ95Uncharacterized protein. (1217 aa)    
Predicted Functional Partners:
A0A1E4U297
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.996
A0A1E4TWI8
Uncharacterized protein.
    
 
 0.994
A0A1E4TN96
Uncharacterized protein.
   
 0.989
A0A1E4TTD9
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.988
A0A1E4TRU9
XPA_C domain-containing protein.
    
 0.985
A0A1E4TVH7
RPOL4c domain-containing protein.
    
 0.985
A0A1E4TPY7
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.981
A0A1E4TUD1
WD_REPEATS_REGION domain-containing protein.
    
 0.980
A0A1E4TTI0
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 
 0.974
A0A1E4U0T9
RPOLD domain-containing protein.
    
 0.974
Your Current Organism:
Pachysolen tannophilus
NCBI taxonomy Id: 669874
Other names: P. tannophilus NRRL Y-2460, Pachysolen tannophilus CBS 4044, Pachysolen tannophilus NRRL Y-2460
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