STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH24843.1N-acetylglucosamine-binding protein A; GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)    
Predicted Functional Partners:
KOH18385.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.907
KOH20983.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.892
KOH22333.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.883
KOH24675.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.864
KOH22429.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.857
KOH22125.1
Peptidase M9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.844
KOH22543.1
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.796
KOH17302.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.772
KOH24642.1
Spindolin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.752
KOH22363.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.696
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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