Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
scrBABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)    
Predicted Functional Partners:
KOH24914.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.823
opaR
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.723
KOH24912.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.696
KOH20943.1
OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.584
KOH24953.1
Propeptide, peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
KOH22268.1
Arginine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
  
     0.524
KOH23774.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.475
KOH22800.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
KOH20927.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
KOH22269.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.466
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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