STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH25073.1CsuD protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (802 aa)    
Predicted Functional Partners:
KOH25072.1
CsuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KOH24919.1
Protein CsuE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.988
KOH24918.1
CsuB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.917
KOH24917.1
CsuA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.889
KOH24893.1
Flagellar protein MotY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.604
KOH17473.1
CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.601
KOH25225.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.592
KOH18512.1
Chitobiase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.587
hisE
phosphoribosyl-ATP pyrophosphatase; Catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.507
KOH24920.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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