Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH24951.1Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)    
Predicted Functional Partners:
KOH24952.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.781
KOH24953.1
Propeptide, peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
KOH24954.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.756
KOH24955.1
HutR like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.756
mmsA
Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
KOH19583.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.543
mazG
Nucleoside triphosphate hydrolase; Functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.542
KOH22237.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.439
KOH18267.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.
      
 0.420
KOH22133.1
Prolyl endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.413
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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