Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH24952.1Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)    
Predicted Functional Partners:
KOH24953.1
Propeptide, peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.933
KOH24955.1
HutR like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.864
KOH24954.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.787
KOH24951.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.781
KOH22723.1
HugZ protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.781
KOH22935.1
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.744
KOH20943.1
OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
KOH19372.1
Sugar ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.698
KOH22800.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
KOH18095.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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