Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH24953.1Propeptide, peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)    
Predicted Functional Partners:
KOH24952.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.933
KOH24955.1
HutR like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.926
KOH22885.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.908
KOH24954.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.819
KOH17385.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
   
 0.802
KOH20943.1
OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.775
KOH21189.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
KOH24951.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
KOH22800.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
KOH22959.1
Thermolabile hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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