Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KOH25078.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3695 aa)    
Predicted Functional Partners:
KOH24969.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.920
KOH22885.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.714
KOH17385.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
 
 0.708
KOH21182.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.666
KOH24970.1
OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.647
KOH18766.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.629
KOH18218.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.467
KOH25044.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.450
KOH24971.1
Mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
tolA
Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.435
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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