Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH25038.1Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)    
Predicted Functional Partners:
KOH25039.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KOH22581.1
Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
KOH25227.1
Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.594
KOH21184.1
Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.591
KOH22540.1
Amino acid dehydrogenase; Catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.571
hutH
Catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.542
KOH23825.1
Anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.539
KOH24792.1
Aconitase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.436
KOH22862.1
Serine dehydratase; Catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.421
KOH17998.1
Serine dehydratase; Catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.421
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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