Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH23987.1Lysine decarboxylase LdcC; Constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)    
Predicted Functional Partners:
cadB
Antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
KOH22038.1
Converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.906
KOH24791.1
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.818
KOH18727.1
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.818
KOH17430.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.734
potE
Catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.713
KOH18047.1
Carboxynorspermidine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.644
KOH24964.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.498
KOH18048.1
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.453
KOH22308.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.431
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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