| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KOH18485.1 | KOH21571.1 | ACZ92_20435 | ACZ92_09830 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.984 |
| KOH18485.1 | rplM | ACZ92_20435 | ACZ92_15395 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.991 |
| KOH18485.1 | rplU | ACZ92_20435 | ACZ92_14895 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.990 |
| KOH18485.1 | rpmB | ACZ92_20435 | ACZ92_14195 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 50S ribosomal protein L28; Required for 70S ribosome assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.987 |
| KOH18485.1 | rpmF | ACZ92_20435 | ACZ92_18515 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.986 |
| KOH18485.1 | rpmH | ACZ92_20435 | ACZ92_03410 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 50S ribosomal protein L34; In Escherichia coli transcription of this gene is enhanced by polyamines; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family. | 0.981 |
| KOH18485.1 | rpsN | ACZ92_20435 | ACZ92_14630 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.997 |
| KOH18485.1 | rpsP | ACZ92_20435 | ACZ92_20825 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
| KOH18485.1 | rpsT | ACZ92_20435 | ACZ92_15820 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.987 |
| KOH18485.1 | rpsU | ACZ92_20435 | ACZ92_15250 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 30S ribosomal protein S21; A small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family. | 0.986 |
| KOH21571.1 | KOH18485.1 | ACZ92_09830 | ACZ92_20435 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.984 |
| KOH21571.1 | rplM | ACZ92_09830 | ACZ92_15395 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.986 |
| KOH21571.1 | rplU | ACZ92_09830 | ACZ92_14895 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.984 |
| KOH21571.1 | rpmB | ACZ92_09830 | ACZ92_14195 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L28; Required for 70S ribosome assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.986 |
| KOH21571.1 | rpmF | ACZ92_09830 | ACZ92_18515 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.987 |
| KOH21571.1 | rpmH | ACZ92_09830 | ACZ92_03410 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L34; In Escherichia coli transcription of this gene is enhanced by polyamines; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family. | 0.983 |
| KOH21571.1 | rpsN | ACZ92_09830 | ACZ92_14630 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.985 |
| KOH21571.1 | rpsP | ACZ92_09830 | ACZ92_20825 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family. | 0.986 |
| KOH21571.1 | rpsT | ACZ92_09830 | ACZ92_15820 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.969 |
| KOH21571.1 | rpsU | ACZ92_09830 | ACZ92_15250 | 50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S21; A small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family. | 0.984 |
STRING v12.5 is now available!
