STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH23810.1Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
KOH17884.1
delta-VPH; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.720
KOH19399.1
Catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.690
KOH24813.1
Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.681
ribD
5-amino-6-(5-phosphoribosylamino)uracil reductase; Riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.674
KOH23809.1
Gram-positive sporulation control protein Spo0M; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.617
msrA-2
Methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
KOH22959.1
Thermolabile hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.449
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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