STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH22956.1Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
KOH22857.1
LfgN; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
KOH21450.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.621
KOH22958.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.612
KOH24970.1
OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
KOH24893.1
Flagellar protein MotY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
lfgM
LfgM; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.579
KOH22492.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.573
KOH21535.1
Phosphoribosylformylglycinamidine synthase; Catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.555
KOH20880.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
KOH21218.1
Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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