Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH22958.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (335 aa)    
Predicted Functional Partners:
KOH24893.1
Flagellar protein MotY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
KOH24970.1
OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
KOH22348.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
KOH22174.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.705
tolB
Translocation protein TolB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.681
KOH21920.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.623
KOH22956.1
Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
KOH22909.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.605
KOH21901.1
Iron-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.588
KOH24730.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.541
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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