STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH22940.1Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)    
Predicted Functional Partners:
KOH22935.1
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.889
KOH22934.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
KOH22936.1
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.714
KOH22938.1
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.710
KOH19372.1
Sugar ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.710
KOH22939.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.674
KOH18607.1
YiuR; outer membrane siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.671
KOH22474.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.669
KOH22937.1
TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.665
KOH17232.1
S-type Pyocin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.650
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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