Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH22592.1Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)    
Predicted Functional Partners:
KOH18567.1
alanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.924
KOH24953.1
Propeptide, peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
KOH20943.1
OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
der
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.
       0.718
KOH21189.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
KOH22800.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
bamB
Membrane biogenesis protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
       0.649
KOH22549.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
KOH18602.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.639
HisS
Histidinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.638
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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