STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH22190.1Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
KOH22192.1
Cytochrome B561; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
KOH22191.1
Cytochrome oxidase biogenesis cluster protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.991
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.965
KOH22189.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.855
KOH22188.1
Cytochrome oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.841
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
   0.699
KOH24801.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.691
KOH19591.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.672
KOH19279.1
Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.663
KOH22885.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.659
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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