Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH21965.1Dihydropteridine reductase; Flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family. (394 aa)    
Predicted Functional Partners:
KOH21964.1
Transcriptional repressor NsrR; Negatively regulates the transcription of genes upregulated by nitrosative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
KOH24763.1
Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.928
KOH18431.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.890
KOH21110.1
Has hydroxylamine reductase activity, catalyzes the reduction of hydroxylamine to ammonia and water; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.861
KOH17446.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.849
lldD
Lactate dehydrogenase; Flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.816
KOH20942.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.637
KOH24869.1
Formate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.631
nrfA
Catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.607
msrA-2
Methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.601
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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