STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KOH21968.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)    
Predicted Functional Partners:
KOH18327.1
Outer membrane protein assembly factor BamC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
KOH21947.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
KOH17315.1
NAD(P)H-hydrate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.650
KOH21974.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.595
KOH17777.1
Prop expression regulator; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
     0.583
KOH21967.1
Adenylosuccinate synthetase; Catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.567
KOH21973.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.542
hflC
Protein HflC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.541
KOH21970.1
Membrane protease HflK; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.541
MiaA
tRNA dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.541
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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