Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH20964.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
KOH20965.1
Endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
KOH20963.1
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.985
KOH20643.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.973
KOH20644.1
Toluene ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.941
KOH20646.1
NTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.881
KOH20879.1
Anti-anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.825
KOH20962.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.789
KOH22148.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.664
GltB
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
oppD-2
Oligopeptide transporter ATP-binding component; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     
0.503
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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