Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH17829.1Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
KOH17826.1
Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.970
KOH17828.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.954
KOH17830.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.954
KOH17822.1
Low calcium response locus protein H; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.952
KOH17821.1
Translocator protein PopB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.928
KOH17823.1
Type III secretion cytoplasmic LcrG inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.913
KOH17824.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.913
KOH17825.1
Type III secretion low calcium response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.909
KOH17832.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.906
KOH17836.1
Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.871
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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