Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bolAPositive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BolA/IbaG family. (102 aa)    
Predicted Functional Partners:
KOH18199.1
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.929
KOH18398.1
50S rRNA methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
     
 0.787
nfuA
Amino acid ABC transporter substrate-binding protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.749
KOH18399.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.691
KOH18400.1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.691
KOH18401.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.653
wrbA
Trp operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.650
KOH22122.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
   
  
 0.610
KOH22208.1
DNA polymerase sliding clamp subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
   
  
 0.610
uspB
Universal stress protein UspB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.557
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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